PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 898836
Common NameARALYDRAFT_898836
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 219aa    MW: 24743.3 Da    PI: 5.4517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
898836genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-1981131255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
              y+GVr+++ +g+++AeIrd + ng   r++lg+f +aeeAa a+++a+ +++g
  898836  81 SYRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFESAEEAALAYDQAAFSMRG 131
             69*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.16E-2980138No hitNo description
Gene3DG3DSA:3.30.730.106.1E-3081139IPR001471AP2/ERF domain
SMARTSM003804.8E-3781145IPR001471AP2/ERF domain
PROSITE profilePS5103222.73481139IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2281140IPR016177DNA-binding domain
PfamPF008471.1E-1381131IPR001471AP2/ERF domain
PRINTSPR003671.9E-108293IPR001471AP2/ERF domain
PRINTSPR003671.9E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDPSFLQSPL SSFSPEYSTG SSPESFSSSS SNNYSLPFNE NDSEEMFLYG LIKQSTQRNF  60
IESNLQDLPV KSVSSRNSEK SYRGVRRRPW GKFAAEIRDS TRNGIRVWLG TFESAEEAAL  120
AYDQAAFSMR GSSAILNFSP ERVQESLSEM KYTYEDGCSP VVALKRKHSM RRRKTNKKTK  180
DSDFDHRSVK LDNVVVFEDL GEQYLEELLG SSENSGTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2880143163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174MRRRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860780.0AY086078.1 Arabidopsis thaliana clone 21068 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883413.11e-160ATERF1/ERF1
SwissprotQ8LDC81e-136ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLD7L3951e-160D7L395_ARALL; ATERF1/ERF1
STRINGscaffold_302806.11e-159(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-114ethylene response factor 1